Gluten free pumpkin muffins bring the warm flavors of fall into your kitchen without any wheat flour. These tender, spiced treats have become my go-to recipe every autumn. They fill my home with the scent of cinnamon and nutmeg while baking.
I discovered this recipe three years ago when my daughter was diagnosed with celiac disease. Finding baked goods she could enjoy became my mission. After many experiments, I perfected these moist, fluffy muffins that nobody believes are gluten free.
Table of Contents
Why These Gf Pumpkin Muffins Stand Out
These muffins rise perfectly every time. The texture stays soft for days. They taste just like traditional pumpkin muffins. My whole family requests them weekly from September through November.
The recipe uses simple ingredients you probably have at home. No special equipment needed. Just two bowls and a whisk will do. Even beginners can make these successfully on their first try.
Essential Ingredients for Success

The Flour Base
Almond flour pumpkin muffins get their tender crumb from finely ground blanched almonds. Choose super-fine almond flour for best results. Regular almond meal creates a grittier texture. I recommend Bob’s Red Mill or King Arthur brands.
Some recipes combine almond flour with oat flour. Pumpkin oat muffins gluten free versions add extra fiber and nutrients. Make oat flour by grinding certified gluten-free oats in a blender.
The Star Ingredient
Pure pumpkin puree brings moisture and flavor. Use canned pumpkin, not pumpkin pie filling. One 15-ounce can makes exactly 12 muffins. No leftover pumpkin to store.
Fresh pumpkin works too. Roast and puree your own for deeper flavor. The extra effort pays off in taste.
Binding and Rising Agents
Eggs bind the ingredients and add structure. Room temperature eggs mix better. Set them out 30 minutes before baking.
Baking powder and baking soda work together for perfect rise. Fresh leavening agents matter. Replace them every six months for best results.
Natural Sweeteners
Maple syrup adds sweetness without refined sugar. Honey works as a substitute. Coconut sugar creates deeper caramel notes. Use what you prefer.
Warming Spices
Gluten free pumpkin spice blend saves time. Make your own with:
- 2 teaspoons cinnamon
- 1 teaspoon ginger
- 1/2 teaspoon nutmeg
- 1/4 teaspoon cloves
Step-by-Step Baking Instructions
Preparation
Heat your oven to 350°F. Line a 12-cup muffin tin with paper liners. Spray liners lightly with cooking spray. This prevents sticking.
Measure all ingredients before starting. Room temperature ingredients mix more easily. Set out eggs, milk, and pumpkin 30 minutes ahead.
Step 1: Mixing the Batter
Whisk dry ingredients in a large bowl:
- 2 cups almond flour
- 1 teaspoon baking powder
- 1/2 teaspoon baking soda
- 2 teaspoons pumpkin spice
- 1/2 teaspoon salt
Combine wet ingredients in another bowl:
- 1 can (15 oz) pumpkin puree
- 3 large eggs
- 1/3 cup maple syrup
- 1/4 cup melted coconut oil
- 1 teaspoon vanilla extract
Pour wet ingredients into dry. Fold gently until just combined. Small lumps are fine. Overmixing creates dense muffins.
Step 2: Adding Mix-Ins

Gluten free pumpkin choc chip muffins need quality chocolate. Use dairy-free chips for allergy-friendly versions. Fold in 3/4 cup chocolate chips last.
Other delicious additions:
- Chopped pecans or walnuts
- Dried cranberries
- Pumpkin seeds
- Cinnamon chips
Step 3: Baking to Perfection

Fill muffin cups 3/4 full. Bake 22-25 minutes. A toothpick inserted should come out with just a few moist crumbs.
Cool in the pan 5 minutes. Transfer to a wire rack. Serve warm or at room temperature.
Making Dairy Free Pumpkin Muffins
Replace regular milk with unsweetened almond milk. Use coconut oil instead of butter. Dairy free pumpkin muffins taste just as rich and moist.
Healthy pumpkin muffins dairy free versions satisfy everyone. They work for lactose intolerance and milk allergies. Nobody notices the difference.
Creating Versions
Creating Protein-Packed Versions
Add collagen peptides for extra protein. Pumpkin chocolate chip protein muffins keep you fuller longer. Use 2 scoops unflavored protein powder. Reduce flour by 1/4 cup to compensate.
Healthy pumpkin chocolate chip muffins balance nutrition and taste. Each muffin provides sustained energy. Perfect for breakfast or post-workout snacks.
Making Pumpkin Oatmeal Muffins
Pumpkin oatmeal muffins add heartiness. Replace half the almond flour with oat flour. The texture becomes slightly denser but very satisfying.
Grind gluten-free oats into flour yourself. A high-speed blender works perfectly. Sift out any large pieces.
Best Pumpkin Muffins for Every Diet
These adapt to many dietary needs:
- Gluten-free for celiac disease
- Dairy-free for lactose intolerance
- Refined sugar-free with natural sweeteners
- High protein with added collagen
Everyone can enjoy these treats. No one feels left out at gatherings.
Storage and Freezing Tips
Store muffins in an airtight container. They stay fresh 3 days at room temperature. Refrigerate for up to one week.
Freeze individually wrapped muffins up to 3 months. Thaw overnight in the fridge. Microwave 20 seconds to warm through.
Troubleshooting Common Issues
Muffins Won’t Rise
Check your leavening agents’ expiration dates. Old baking powder loses effectiveness. Measure accurately using proper measuring cups.
Oven temperature matters too. Use an oven thermometer. Many ovens run hot or cold.
Dense or Gummy Texture
Avoid overmixing the batter. Stop when ingredients just combine. Too much stirring develops gluten in oat flour.
Don’t overbake either. Start checking at 20 minutes. Every oven varies slightly.
Dry or Crumbly Results
Add an extra egg for moisture. Or increase pumpkin by 2 tablespoons. Almond flour absorbs liquid differently than wheat flour.
Store properly to maintain moisture. Wrap tightly once completely cool.
Recipe Variations to Try
Mini Muffins
Bake mini versions for 12-15 minutes. Perfect for lunchboxes or parties. Kids love the bite-sized treats.
Muffin Bread
Pour batter into a loaf pan. Bake 50-60 minutes until done. Slice for easy breakfast portions.
Streusel Topping
Mix 1/4 cup almond flour with 2 tablespoons brown sugar. Add 2 tablespoons cold butter. Sprinkle over muffins before baking.
Serving Suggestions
Warm muffins taste amazing alone. Add these toppings for special occasions:
- Cream cheese frosting (use dairy-free if needed)
- Butter and honey
- Almond butter spread
- Whipped coconut cream
Conclusion
These gluten free pumpkin muffins prove that dietary restrictions don’t mean sacrificing flavor. Simple ingredients create extraordinary results. Your kitchen fills with the scents of fall while providing nutritious treats for everyone.
Start with this basic recipe. Then experiment with your favorite additions. Soon you’ll have your own signature version. Happy baking!

Gluten-Free Pumpkin Muffins
Ingredients
Method
- Preheat oven to 350°F (175°C). Line a muffin tin with paper liners or lightly grease it.
- In a large bowl, whisk together the flour, baking soda, baking powder, salt, cinnamon, and nutmeg.
- In a separate bowl, combine the pumpkin puree, eggs, maple syrup, coconut oil, vanilla, and milk. Mix well.
- Pour the wet ingredients into the dry ingredients and stir until just combined. Do not overmix.
- Divide the batter evenly among the muffin cups, filling each about ¾ full.
- Bake for 18–22 minutes, or until a toothpick inserted into the center comes out clean.
- Let the muffins cool in the tin for 5 minutes, then transfer to a wire rack to cool completely.
Notes
- Calories: 150
- Total Fat: 10g
- Saturated Fat: 3g
- Trans Fat: 0g
- Cholesterol: 47mg
- Sodium: 180mg
- Total Carbohydrates: 12g
- Dietary Fiber: 2g
- Sugars: 6g
- Protein: 5g
- Vitamin A: 45% DV
- Calcium: 6% DV
FAQs
Can I substitute almond flour with coconut flour in this recipe?
No, coconut flour and almond flour are not interchangeable. Coconut flour absorbs much more liquid than almond flour. If you want to use coconut flour, you’ll need a completely different recipe with adjusted liquid ratios. For best results, stick with almond flour or try a gluten-free flour blend instead.
Why are my gluten free pumpkin muffins sinking in the middle?
Muffins typically sink when there’s too much leavening agent, the oven temperature is too high, or they’re underbaked. Make sure to measure baking powder and baking soda accurately. Also, avoid opening the oven door during the first 20 minutes of baking, as this can cause temperature fluctuations that lead to sinking.
Can I make these muffins without eggs?
Yes, you can make egg-free versions using flax eggs or chia eggs. For each egg, mix 1 tablespoon ground flaxseed or chia seeds with 3 tablespoons water. Let it sit for 5 minutes until gel-like. However, the texture may be slightly denser than the original recipe.
How do I know when gluten free pumpkin muffins are done baking?
Insert a toothpick into the center of a muffin. It should come out with just a few moist crumbs attached, not wet batter. The muffin tops should spring back lightly when touched. They’ll also smell wonderfully spiced and pull slightly away from the muffin liner edges.
Can I reduce the sugar in this recipe?
Yes, you can reduce the maple syrup to 1/4 cup for less sweet muffins. The muffins will still taste good but may be slightly less moist. Don’t eliminate sweetener completely, as it contributes to the muffins’ texture and helps them brown properly.
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